Merge pull request #1523 from virtualcell/key-value-searlizes-to-string

KeyValue Serialization, Fix BioModel Save Bug, and Update BioModel Save Input

Author: Ezequiel-Valencia

python-restclient/.openapi-generator/FILES

@@ -29,15 +29,13 @@ docs/HelloWorldMessage.md
 docs/HtcJobID.md
 docs/ISize.md
 docs/Identity.md
-docs/KeyValue.md
 docs/MathType.md
 docs/MathmodelRef.md
 docs/ModelType.md
 docs/Origin.md
 docs/Publication.md
 docs/PublicationInfo.md
 docs/PublicationResourceApi.md
-docs/SaveBioModel.md
 docs/SchedulerStatus.md
 docs/SimulationExecutionStatusRecord.md
 docs/SimulationJobStatusRecord.md
@@ -105,14 +103,12 @@ vcell_client/models/hello_world_message.py
 vcell_client/models/htc_job_id.py
 vcell_client/models/i_size.py
 vcell_client/models/identity.py
-vcell_client/models/key_value.py
 vcell_client/models/math_type.py
 vcell_client/models/mathmodel_ref.py
 vcell_client/models/model_type.py
 vcell_client/models/origin.py
 vcell_client/models/publication.py
 vcell_client/models/publication_info.py
-vcell_client/models/save_bio_model.py
 vcell_client/models/scheduler_status.py
 vcell_client/models/simulation_execution_status_record.py
 vcell_client/models/simulation_job_status_record.py

python-restclient/README.md

@@ -154,14 +154,12 @@ Class | Method | HTTP request | Description
  - [HtcJobID](docs/HtcJobID.md)
  - [ISize](docs/ISize.md)
  - [Identity](docs/Identity.md)
- - [KeyValue](docs/KeyValue.md)
  - [MathType](docs/MathType.md)
  - [MathmodelRef](docs/MathmodelRef.md)
  - [ModelType](docs/ModelType.md)
  - [Origin](docs/Origin.md)
  - [Publication](docs/Publication.md)
  - [PublicationInfo](docs/PublicationInfo.md)
- - [SaveBioModel](docs/SaveBioModel.md)
  - [SchedulerStatus](docs/SchedulerStatus.md)
  - [SimulationExecutionStatusRecord](docs/SimulationExecutionStatusRecord.md)
  - [SimulationJobStatusRecord](docs/SimulationJobStatusRecord.md)

python-restclient/docs/BioModel.md

@@ -14,7 +14,7 @@ Name | Type | Description | Notes
 **phys_model_key** | **str** |  | [optional] 
 **owner_name** | **str** |  | [optional] 
 **owner_key** | **str** |  | [optional] 
-**simulation_key_list** | [**List[KeyValue]**](KeyValue.md) |  | [optional] 
+**simulation_key_list** | **List[str]** |  | [optional] 
 **applications** | **List[object]** |  | [optional] 
 
 ## Example

python-restclient/docs/BioModelResourceApi.md

@@ -346,7 +346,7 @@ No authorization required
 [[Back to top]](#) [[Back to API list]](../README.md#documentation-for-api-endpoints) [[Back to Model list]](../README.md#documentation-for-models) [[Back to README]](../README.md)
 
 # **save_bio_model**
-> str save_bio_model(save_bio_model=save_bio_model)
+> str save_bio_model(body, new_name=new_name, sims_requiring_updates=sims_requiring_updates)
 
 Save's the given BioModel. Optional parameters of name and simulations to update due to math changes. Returns saved BioModel as VCML.
 
@@ -356,7 +356,6 @@ Save's the given BioModel. Optional parameters of name and simulations to update
 import time
 import os
 import vcell_client
-from vcell_client.models.save_bio_model import SaveBioModel
 from vcell_client.rest import ApiException
 from pprint import pprint
 
@@ -375,11 +374,13 @@ configuration = vcell_client.Configuration(
 with vcell_client.ApiClient(configuration) as api_client:
     # Create an instance of the API class
     api_instance = vcell_client.BioModelResourceApi(api_client)
-    save_bio_model = vcell_client.SaveBioModel() # SaveBioModel |  (optional)
+    body = 'body_example' # str | BioModelVCML which will be saved.
+    new_name = 'new_name_example' # str | Name to save new BioModel under. Leave blank if re-saving existing BioModel. (optional)
+    sims_requiring_updates = ['sims_requiring_updates_example'] # List[str] | The name of simulations that will be prepared for future execution. (optional)
 
     try:
         # Save's the given BioModel. Optional parameters of name and simulations to update due to math changes. Returns saved BioModel as VCML.
-        api_response = api_instance.save_bio_model(save_bio_model=save_bio_model)
+        api_response = api_instance.save_bio_model(body, new_name=new_name, sims_requiring_updates=sims_requiring_updates)
         print("The response of BioModelResourceApi->save_bio_model:\n")
         pprint(api_response)
     except Exception as e:
@@ -392,7 +393,9 @@ with vcell_client.ApiClient(configuration) as api_client:
 
 Name | Type | Description  | Notes
 ------------- | ------------- | ------------- | -------------
- **save_bio_model** | [**SaveBioModel**](SaveBioModel.md)|  | [optional] 
+ **body** | **str**| BioModelVCML which will be saved. | 
+ **new_name** | **str**| Name to save new BioModel under. Leave blank if re-saving existing BioModel. | [optional] 
+ **sims_requiring_updates** | [**List[str]**](str.md)| The name of simulations that will be prepared for future execution. | [optional] 
 
 ### Return type
 
@@ -404,7 +407,7 @@ Name | Type | Description  | Notes
 
 ### HTTP request headers
 
- - **Content-Type**: application/json
+ - **Content-Type**: application/xml
  - **Accept**: application/xml, application/json
 
 ### HTTP response details

python-restclient/docs/ExternalDataIdentifier.md

@@ -4,13 +4,13 @@
 ## Properties
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
-**key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**key** | **str** |  | [optional] 
 **owner** | [**User**](User.md) |  | [optional] 
 **name** | **str** |  | [optional] 
 **job_index** | **int** |  | [optional] 
-**simulation_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**simulation_key** | **str** |  | [optional] 
 **parameter_scan_type** | **bool** |  | [optional] 
-**data_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**data_key** | **str** |  | [optional] 
 
 ## Example
 

python-restclient/docs/FieldDataReference.md

@@ -6,7 +6,7 @@ Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
 **field_data_id** | [**ExternalDataIdentifier**](ExternalDataIdentifier.md) |  | [optional] 
 **annotation** | **str** |  | [optional] 
-**simulations_referencing_this_id** | [**List[KeyValue]**](KeyValue.md) |  | [optional] 
+**simulations_referencing_this_id** | **List[str]** |  | [optional] 
 
 ## Example
 

python-restclient/docs/PublicationInfo.md

@@ -4,8 +4,8 @@
 ## Properties
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
-**publication_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
-**version_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**publication_key** | **str** |  | [optional] 
+**version_key** | **str** |  | [optional] 
 **title** | **str** |  | [optional] 
 **authors** | **List[str]** |  | [optional] 
 **citation** | **str** |  | [optional] 

python-restclient/docs/User.md

@@ -5,7 +5,7 @@
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
 **user_name** | **str** |  | [optional] 
-**key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**key** | **str** |  | [optional] 
 
 ## Example
 

python-restclient/docs/VCSimulationIdentifier.md

@@ -4,7 +4,7 @@
 ## Properties
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
-**simulation_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**simulation_key** | **str** |  | [optional] 
 **owner** | [**User**](User.md) |  | [optional] 
 **id** | **str** |  | [optional] 
 

python-restclient/docs/Version.md

@@ -4,10 +4,10 @@
 ## Properties
 Name | Type | Description | Notes
 ------------ | ------------- | ------------- | -------------
-**version_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**version_key** | **str** |  | [optional] 
 **annot** | **str** |  | [optional] 
 **branch_id** | **float** |  | [optional] 
-**branch_point_ref_key** | [**KeyValue**](KeyValue.md) |  | [optional] 
+**branch_point_ref_key** | **str** |  | [optional] 
 **var_date** | **datetime** |  | [optional] 
 **flag** | [**VersionFlag**](VersionFlag.md) |  | [optional] 
 **group_access** | [**GroupAccess**](GroupAccess.md) |  | [optional]