Update 04

Author: keller-mark

notebooks/04-Coordinated-Multiple-Views.ipynb

@@ -617,45 +617,6 @@
     "- Link the zoom levels of the two spatial views.\n",
     "- Link spot-layer properties of both spatial views (opacity, filled/stroked, stroke width, etc.)"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "2bb228b0",
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "# Exercise 3 — your answer here\n",
-    "vc4 = VitessceConfig(schema_version=\"1.0.18\", name=\"Side-by-side gene comparison\")\n",
-    "\n",
-    "wrapper4 = SpatialDataWrapper(\n",
-    "    sdata_path=sdata_filepath,\n",
-    "    image_path=\"images/ST8059050_hires_image\",\n",
-    "    obs_spots_path=\"shapes/ST8059050\",\n",
-    "    table_path=\"tables/table\",\n",
-    "    obs_feature_matrix_path=\"tables/table/X\",\n",
-    "    region=\"ST8059050\",\n",
-    "    coordinate_system=\"global\",\n",
-    "    coordination_values={\"obsType\": \"spot\"},\n",
-    ")\n",
-    "dataset4 = vc4.add_dataset(name=\"Visium\").add_object(wrapper4)\n",
-    "\n",
-    "spatial_a = vc4.add_view(\"spatialBeta\", dataset=dataset4)\n",
-    "spatial_b = vc4.add_view(\"spatialBeta\", dataset=dataset4)\n",
-    "\n",
-    "# TODO: add separate featureSelection scopes for each view\n",
-    "# [scope_a] = vc4.add_coordination(\"featureSelection\")\n",
-    "# scope_a.set_value([\"???\"])\n",
-    "# [scope_b] = vc4.add_coordination(\"featureSelection\")\n",
-    "# scope_b.set_value([\"???\"])\n",
-    "# spatial_a.use_coordination(scope_a)\n",
-    "# spatial_b.use_coordination(scope_b)\n",
-    "\n",
-    "vc4.link_views([spatial_a, spatial_b], [\"obsColorEncoding\", \"obsType\"], [\"geneSelection\", wrapper4.obs_type_label])\n",
-    "\n",
-    "vc4.layout(spatial_a | spatial_b)\n",
-    "vc4.widget()"
-   ]
   }
  ],
  "metadata": {