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Data preparation APIs

Dataset wrapper classes provide functionality for adding in-memory or local data objects to datasets when rendering Vitessce as a Jupyter widget.

We provide default wrapper class implementations for data formats used by popular single-cell and imaging packages.

To write your own custom wrapper class, create a subclass of the AbstractWrapper class, implementing the getter functions for the data types that can be derived from your object.

vitessce.wrappers

.. automodule:: vitessce.wrappers
 :members:

vitessce.export

.. automodule:: vitessce.export
 :members:

vitessce.data_utils

.. automodule:: vitessce.data_utils.ome
 :members:
.. automodule:: vitessce.data_utils.anndata
 :members: