diff --git a/Cargo.lock b/Cargo.lock
index 417ae11f30d..0a8ba07eed3 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -5996,6 +5996,21 @@ dependencies = [
  "tokio-util",
 ]
 
+[[package]]
+name = "noodles-bgzf"
+version = "0.46.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "37290f565045fd2775b549e62dffca7e1afadc70d8d5a3a2ef19609eb3d8193b"
+dependencies = [
+ "bytes",
+ "crossbeam-channel",
+ "flate2",
+ "futures",
+ "pin-project-lite",
+ "tokio",
+ "tokio-util",
+]
+
 [[package]]
 name = "noodles-core"
 version = "0.18.0"
@@ -6014,7 +6029,7 @@ dependencies = [
  "bit-vec 0.8.0",
  "bstr",
  "indexmap",
- "noodles-bgzf",
+ "noodles-bgzf 0.44.0",
  "noodles-core",
 ]
 
@@ -6026,7 +6041,7 @@ checksum = "3dd8ed06bbf341ce64649717ce0fa1723bf60547eb7d61bd271b79130016dfa4"
 dependencies = [
  "bstr",
  "indexmap",
- "noodles-bgzf",
+ "noodles-bgzf 0.44.0",
  "noodles-core",
  "noodles-csi",
  "tokio",
@@ -6041,7 +6056,7 @@ dependencies = [
  "futures",
  "indexmap",
  "memchr",
- "noodles-bgzf",
+ "noodles-bgzf 0.44.0",
  "noodles-core",
  "noodles-csi",
  "noodles-tabix",
@@ -9820,7 +9835,7 @@ dependencies = [
  "indicatif",
  "itertools 0.14.0",
  "mimalloc",
- "noodles-bgzf",
+ "noodles-bgzf 0.46.0",
  "noodles-vcf",
  "parking_lot",
  "parquet",
diff --git a/Cargo.toml b/Cargo.toml
index d095d8334ca..6e7f5ce9f25 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -172,7 +172,7 @@ memmap2 = "0.9.5"
 mimalloc = "0.1.42"
 moka = { version = "0.12.10", default-features = false }
 multiversion = "0.8.0"
-noodles-bgzf = "0.44.0"
+noodles-bgzf = "0.46.0"
 noodles-vcf = "0.82.0"
 num-traits = "0.2.19"
 num_enum = { version = "0.7.3", default-features = false }