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feat(vortex-geo): native Point extension type and GeoDistance scalar function #8342
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| Original file line number | Diff line number | Diff line change |
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| // SPDX-License-Identifier: Apache-2.0 | ||
| // SPDX-FileCopyrightText: Copyright the Vortex contributors | ||
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| //! Coordinate building blocks for geometry extension types: the `Struct<x, y, z?, m?>` storage, | ||
| //! its [`Dimension`], and the decoded [`Coordinate`] value. | ||
| //! | ||
| //! The coordinate fields, where `?` marks an optional field, are: | ||
| //! - `x` — longitude or easting | ||
| //! - `y` — latitude or northing | ||
| //! - `z?` — elevation | ||
| //! - `m?` — measure: an arbitrary per-point value such as distance along a route or a timestamp | ||
|
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. why do we always prefer f64 vs f32?
Contributor
Author
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. cause |
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| use std::fmt::Display; | ||
| use std::fmt::Formatter; | ||
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| use vortex_array::ArrayRef; | ||
| use vortex_array::ExecutionCtx; | ||
| use vortex_array::arrays::ExtensionArray; | ||
| use vortex_array::arrays::PrimitiveArray; | ||
| use vortex_array::arrays::StructArray; | ||
| use vortex_array::arrays::extension::ExtensionArrayExt; | ||
| use vortex_array::arrays::struct_::StructArrayExt; | ||
| use vortex_array::dtype::DType; | ||
| use vortex_array::dtype::Nullability; | ||
| use vortex_array::dtype::PType; | ||
| use vortex_array::scalar::Scalar; | ||
| use vortex_error::VortexResult; | ||
| use vortex_error::vortex_bail; | ||
| use vortex_error::vortex_ensure; | ||
| use vortex_error::vortex_err; | ||
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| /// Coordinate dimensions, matching GeoArrow. Field order is fixed: `x`, `y`, then `z` before `m`. | ||
| #[derive(Debug, Clone, Copy, PartialEq, Eq)] | ||
| pub(crate) enum Dimension { | ||
| /// 2D: `x`, `y`. | ||
| Xy, | ||
| /// 3D with elevation: `x`, `y`, `z`. | ||
| Xyz, | ||
| /// 3D with a measure: `x`, `y`, `m`. | ||
| Xym, | ||
| /// 4D: `x`, `y`, `z`, `m`. | ||
| Xyzm, | ||
| } | ||
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| impl Dimension { | ||
| /// Recover the dimension from a coordinate's field names, in GeoArrow order. | ||
| pub(crate) fn from_field_names(names: &[&str]) -> VortexResult<Dimension> { | ||
| Ok(match names { | ||
| ["x", "y"] => Dimension::Xy, | ||
| ["x", "y", "z"] => Dimension::Xyz, | ||
| ["x", "y", "m"] => Dimension::Xym, | ||
| ["x", "y", "z", "m"] => Dimension::Xyzm, | ||
| _ => vortex_bail!("not a valid GeoArrow coordinate dimension: {names:?}"), | ||
| }) | ||
| } | ||
| } | ||
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| /// A decoded coordinate. `z?`/`m?` are `Some` iff the storage dimension includes them. | ||
| /// | ||
| /// This is the native value produced when unpacking a [`Point`](crate::extension::Point) scalar; | ||
| /// the rest of the coordinate machinery is crate-internal. | ||
| #[derive(Debug, Clone, Copy, PartialEq)] | ||
| pub struct Coordinate { | ||
| /// The x (longitude/easting) ordinate. | ||
| pub x: f64, | ||
| /// The y (latitude/northing) ordinate. | ||
| pub y: f64, | ||
| /// The optional `z?` (elevation) ordinate. | ||
| pub z: Option<f64>, | ||
| /// The optional `m?` (measure) ordinate. | ||
| pub m: Option<f64>, | ||
| } | ||
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| impl Coordinate { | ||
| /// A 2D coordinate (`z?`/`m?` unset). | ||
| pub fn xy(x: f64, y: f64) -> Self { | ||
| Coordinate { | ||
| x, | ||
| y, | ||
| z: None, | ||
| m: None, | ||
| } | ||
| } | ||
| } | ||
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| impl Display for Coordinate { | ||
| fn fmt(&self, fmt: &mut Formatter<'_>) -> std::fmt::Result { | ||
| match (self.z, self.m) { | ||
| (None, None) => write!(fmt, "POINT({} {})", self.x, self.y), | ||
| (Some(z), None) => write!(fmt, "POINT Z ({} {} {})", self.x, self.y, z), | ||
| (None, Some(m)) => write!(fmt, "POINT M ({} {} {})", self.x, self.y, m), | ||
| (Some(z), Some(m)) => write!(fmt, "POINT ZM ({} {} {} {})", self.x, self.y, z, m), | ||
| } | ||
| } | ||
| } | ||
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| /// Validate that `dtype` is a coordinate struct of non-nullable `f64` fields, returning its | ||
| /// [`Dimension`]. Any of the four GeoArrow dimensions validates. | ||
| pub(crate) fn coordinate_dimension(dtype: &DType) -> VortexResult<Dimension> { | ||
| let DType::Struct(fields, _) = dtype else { | ||
| vortex_bail!("coordinate storage must be a Struct, was {dtype}"); | ||
| }; | ||
| let names: Vec<&str> = fields.names().iter().map(|n| n.as_ref()).collect(); | ||
| for (i, field) in fields.fields().enumerate() { | ||
| vortex_ensure!( | ||
| matches!( | ||
| field, | ||
| DType::Primitive(PType::F64, Nullability::NonNullable) | ||
| ), | ||
| "coordinate field {} must be non-nullable f64, was {field}", | ||
| names[i] | ||
| ); | ||
| } | ||
| Dimension::from_field_names(&names) | ||
| } | ||
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| /// Decode a [`Coordinate`] from a coordinate `Struct<x, y, z?, m?>` scalar (`z?`/`m?` read iff | ||
| /// present, so the same decoder serves every dimension). | ||
| pub(crate) fn coordinate_from_struct(scalar: &Scalar) -> VortexResult<Coordinate> { | ||
| let fields = scalar.as_struct(); | ||
| let required = |name: &str| -> VortexResult<f64> { | ||
| f64::try_from( | ||
| &fields | ||
| .field(name) | ||
| .ok_or_else(|| vortex_err!("coordinate missing {name}"))?, | ||
| ) | ||
| }; | ||
| let optional = |name: &str| -> VortexResult<Option<f64>> { | ||
| fields | ||
| .field(name) | ||
| .map(|value| f64::try_from(&value)) | ||
| .transpose() | ||
| }; | ||
| Ok(Coordinate { | ||
| x: required("x")?, | ||
| y: required("y")?, | ||
| z: optional("z")?, | ||
| m: optional("m")?, | ||
| }) | ||
| } | ||
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| /// Decode a [`Coordinate`] from an extension-typed point scalar (unwrapped to its coordinate | ||
| /// storage) or a bare coordinate `Struct` scalar. The per-row decode used by the distance fns. | ||
| pub(crate) fn coordinate_from_scalar(scalar: &Scalar) -> VortexResult<Coordinate> { | ||
| match scalar.as_extension_opt() { | ||
| Some(ext_scalar) => coordinate_from_struct(&ext_scalar.to_storage_scalar()), | ||
| None => coordinate_from_struct(scalar), | ||
| } | ||
| } | ||
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| /// Canonicalize a point column once and return its flat `x`/`y` `f64` columns. The bulk counterpart | ||
| /// to [`coordinate_from_scalar`]; distances use only `x`/`y`, so `z?`/`m?` are ignored. | ||
| pub(crate) fn xy_columns( | ||
| points: &ArrayRef, | ||
| ctx: &mut ExecutionCtx, | ||
| ) -> VortexResult<(PrimitiveArray, PrimitiveArray)> { | ||
| let storage = points | ||
| .clone() | ||
| .execute::<ExtensionArray>(ctx)? | ||
| .storage_array() | ||
| .clone() | ||
| .execute::<StructArray>(ctx)?; | ||
| let xs = storage | ||
| .unmasked_field_by_name("x")? | ||
|
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. you are sure, should check the struct is non-nullable.
Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. at least a debug assert
Contributor
Author
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I add a
Member
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. maybe you want to add a Let me know if that makes sense or not! You can look at the turboquant code for inspiration (though not that we are going to delete that / I need to delete that soon)
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Author
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Got a try, can you look at it? @connortsui20 |
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| .clone() | ||
| .execute::<PrimitiveArray>(ctx)?; | ||
| let ys = storage | ||
| .unmasked_field_by_name("y")? | ||
| .clone() | ||
| .execute::<PrimitiveArray>(ctx)?; | ||
| Ok((xs, ys)) | ||
| } | ||
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| #[cfg(test)] | ||
| mod tests { | ||
| use super::Coordinate; | ||
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| /// Display emits WKT, including `z?`/`m?` when present. | ||
| #[test] | ||
| fn display_is_wkt() { | ||
| let coordinate = |z, m| Coordinate { | ||
| x: 1.0, | ||
| y: 2.0, | ||
| z, | ||
| m, | ||
| }; | ||
| assert_eq!(coordinate(None, None).to_string(), "POINT(1 2)"); | ||
| assert_eq!(coordinate(Some(3.0), None).to_string(), "POINT Z (1 2 3)"); | ||
| assert_eq!(coordinate(None, Some(4.0)).to_string(), "POINT M (1 2 4)"); | ||
| assert_eq!( | ||
| coordinate(Some(3.0), Some(4.0)).to_string(), | ||
| "POINT ZM (1 2 3 4)" | ||
| ); | ||
| } | ||
| } | ||
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| @@ -0,0 +1,165 @@ | ||
| // SPDX-License-Identifier: Apache-2.0 | ||
| // SPDX-FileCopyrightText: Copyright the Vortex contributors | ||
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| //! The [`Point`] geometry extension type (`vortex.geo.point`): a location stored columnarly as | ||
| //! `Struct<x, y, z?, m?>` of `f64`, tagged with [`GeoMetadata`] (CRS). `z?` is an optional | ||
| //! elevation and `m?` an optional measure — an arbitrary per-point value such as distance along a | ||
| //! route or a timestamp. | ||
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| use prost::Message; | ||
| use vortex_array::dtype::extension::ExtDType; | ||
| use vortex_array::dtype::extension::ExtId; | ||
| use vortex_array::dtype::extension::ExtVTable; | ||
| use vortex_array::scalar::Scalar; | ||
| use vortex_array::scalar::ScalarValue; | ||
| use vortex_error::VortexResult; | ||
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| use super::GeoMetadata; | ||
| use super::coordinate::Coordinate; | ||
| use super::coordinate::coordinate_dimension; | ||
| use super::coordinate::coordinate_from_struct; | ||
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| /// A single location: `geoarrow.point`, stored as `Struct<x, y, z?, m?>` of `f64`. | ||
| #[derive(Debug, Clone, Default, PartialEq, Eq, Hash)] | ||
| pub struct Point; | ||
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| impl ExtVTable for Point { | ||
| type Metadata = GeoMetadata; | ||
| type NativeValue<'a> = Coordinate; | ||
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| fn id(&self) -> ExtId { | ||
| ExtId::new_static("vortex.geo.point") | ||
| } | ||
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| fn serialize_metadata(&self, metadata: &Self::Metadata) -> VortexResult<Vec<u8>> { | ||
| Ok(metadata.encode_to_vec()) | ||
| } | ||
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| fn deserialize_metadata(&self, metadata: &[u8]) -> VortexResult<Self::Metadata> { | ||
| Ok(GeoMetadata::decode(metadata)?) | ||
| } | ||
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| fn validate_dtype(ext_dtype: &ExtDType<Self>) -> VortexResult<()> { | ||
| coordinate_dimension(ext_dtype.storage_dtype()).map(|_| ()) | ||
| } | ||
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| fn unpack_native<'a>( | ||
| ext_dtype: &'a ExtDType<Self>, | ||
| storage_value: &'a ScalarValue, | ||
| ) -> VortexResult<Coordinate> { | ||
| let storage = Scalar::try_new( | ||
| ext_dtype.storage_dtype().clone(), | ||
| Some(storage_value.clone()), | ||
| )?; | ||
| coordinate_from_struct(&storage) | ||
| } | ||
| } | ||
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| #[cfg(test)] | ||
| mod tests { | ||
| use vortex_array::IntoArray; | ||
| use vortex_array::VortexSessionExecute; | ||
| use vortex_array::arrays::ExtensionArray; | ||
| use vortex_array::arrays::PrimitiveArray; | ||
| use vortex_array::arrays::StructArray; | ||
| use vortex_array::dtype::DType; | ||
| use vortex_array::dtype::FieldNames; | ||
| use vortex_array::dtype::Nullability; | ||
| use vortex_array::dtype::PType; | ||
| use vortex_array::dtype::StructFields; | ||
| use vortex_array::dtype::extension::ExtDType; | ||
| use vortex_array::session::ArraySession; | ||
| use vortex_error::VortexResult; | ||
| use vortex_session::VortexSession; | ||
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| use super::Point; | ||
| use crate::extension::GeoMetadata; | ||
| use crate::extension::coordinate::Coordinate; | ||
| use crate::extension::coordinate::Dimension; | ||
| use crate::extension::coordinate::coordinate_dimension; | ||
| use crate::extension::coordinate::coordinate_from_scalar; | ||
|
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| fn geo_meta() -> GeoMetadata { | ||
| GeoMetadata { | ||
| crs: Some("EPSG:4326".to_string()), | ||
| } | ||
| } | ||
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| /// A coordinate storage dtype with the given field names, non-nullable `f64` per field. | ||
| fn coordinate_dtype(names: &[&'static str]) -> DType { | ||
| let fields = std::iter::repeat_n( | ||
| DType::Primitive(PType::F64, Nullability::NonNullable), | ||
| names.len(), | ||
| ) | ||
| .collect::<Vec<_>>(); | ||
| DType::Struct( | ||
| StructFields::new(FieldNames::from(names), fields), | ||
| Nullability::NonNullable, | ||
| ) | ||
| } | ||
|
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| /// `Point` accepts every GeoArrow dimension; the canonical field names round-trip to their | ||
| /// dimension, so a `z?`/`m?` swap or a mislabel would be caught. | ||
| #[test] | ||
| fn point_validates_every_dimension() -> VortexResult<()> { | ||
| let cases = [ | ||
| (Dimension::Xy, ["x", "y"].as_slice()), | ||
| (Dimension::Xyz, ["x", "y", "z"].as_slice()), | ||
| (Dimension::Xym, ["x", "y", "m"].as_slice()), | ||
| (Dimension::Xyzm, ["x", "y", "z", "m"].as_slice()), | ||
| ]; | ||
| for (dim, names) in cases { | ||
| let storage = coordinate_dtype(names); | ||
| assert_eq!(coordinate_dimension(&storage)?, dim); | ||
| ExtDType::<Point>::try_new(geo_meta(), storage)?; | ||
| } | ||
| Ok(()) | ||
| } | ||
|
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| /// Invalid storage is rejected at dtype construction: both non-struct storage and a struct whose | ||
| /// fields are not GeoArrow coordinates. | ||
| #[test] | ||
| fn point_rejects_invalid_storage() -> VortexResult<()> { | ||
| let primitive = DType::Primitive(PType::F64, Nullability::NonNullable); | ||
| assert!(ExtDType::<Point>::try_new(geo_meta(), primitive).is_err()); | ||
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| let wrong_fields = StructArray::from_fields(&[ | ||
| ("a", PrimitiveArray::from_iter(vec![0.0f64]).into_array()), | ||
| ("b", PrimitiveArray::from_iter(vec![0.0f64]).into_array()), | ||
| ])? | ||
| .into_array(); | ||
| assert!(ExtDType::<Point>::try_new(geo_meta(), wrong_fields.dtype().clone()).is_err()); | ||
| Ok(()) | ||
| } | ||
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| /// A `Point` column round-trips through scalar execution back to the original coordinates. | ||
| #[test] | ||
| fn point_unpacks_coordinates() -> VortexResult<()> { | ||
| let session = VortexSession::empty().with::<ArraySession>(); | ||
| let mut ctx = session.create_execution_ctx(); | ||
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| let storage = StructArray::from_fields(&[ | ||
| ( | ||
| "x", | ||
| PrimitiveArray::from_iter(vec![1.0f64, -111.7610]).into_array(), | ||
| ), | ||
| ( | ||
| "y", | ||
| PrimitiveArray::from_iter(vec![2.0f64, 34.8697]).into_array(), | ||
| ), | ||
| ])? | ||
| .into_array(); | ||
| let dtype = ExtDType::<Point>::try_new(geo_meta(), storage.dtype().clone())?; | ||
| let points = ExtensionArray::new(dtype.erased(), storage).into_array(); | ||
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| assert_eq!( | ||
| coordinate_from_scalar(&points.execute_scalar(0, &mut ctx)?)?, | ||
| Coordinate::xy(1.0, 2.0) | ||
| ); | ||
| assert_eq!( | ||
| coordinate_from_scalar(&points.execute_scalar(1, &mut ctx)?)?, | ||
| Coordinate::xy(-111.7610, 34.8697) | ||
| ); | ||
| Ok(()) | ||
| } | ||
| } |
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