feat: repos-manifest.json → ai/ folder + new machine bootstrap script

[lesaai]

Problem

`repos-manifest.json` currently lives only as a local file (CC's repos dir). It needs to be the canonical, versioned source of truth — accessible from any machine.

Desired Behavior

1. Move `repos-manifest.json` into `ai/` inside this repo. The `ai/` folder is the right home: it's the WIP/in-progress version of how repos need to be organized, owned by the toolbox, versioned with it.

2. New machine bootstrap flow:
   ```

   On a fresh machine:

   git clone wipcomputer/wip-ai-devops-toolbox-private

   clone all private repos listed in the manifest

   wip-repos clone-all --manifest ai/repos-manifest.json --root ~/repos/

   reorganize into manifest structure

   wip-repos sync --manifest ai/repos-manifest.json --root ~/repos/

   done — repo directory matches manifest exactly

   ```

3. The manifest drives everything — private repos only (no public counterparts), organized into the `ldm-os/*` category structure, with `third-party-repos/` for contribution forks and `_sunsetted/` for deprecated ones.

What Needs to Be Built

• Move `repos-manifest.json` to `ai/repos-manifest.json` in this repo (commit the current version)
• Add `clone-all` command to `wip-repos` CLI: reads manifest, clones any missing repos via `gh repo clone`
• Write bootstrap script (`scripts/bootstrap-repos.sh` or `wip-repos bootstrap`) that runs clone + sync end to end
• Document the flow in README / SKILL.md: "new machine? run this one command"
• Decide: should the manifest be machine-specific or shared? (Current answer: shared — same structure across all machines)

Why This Matters

Right now every machine starts with a flat dump of repos in no particular order, public and private mixed together, with no automated way to clean it up. This turns that into a one-command setup.

Get a new machine → pull the toolbox → run bootstrap → you're organized and ready.

Co-Authored-By: Parker Todd Brooks parker@wipcomputer.com
Co-Authored-By: Lēsa lesaai@icloud.com
Co-Authored-By: Claude Code cc@wipcomputer.com