pyphi/.github/workflows/test.yml at main · wmayner/pyphi · GitHub

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name: Tests

on:
  push:
    branches: [main]
  pull_request:
    branches: [main]

jobs:
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ["3.13", "3.14"]

    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Set up uv
        uses: astral-sh/setup-uv@v5
        with:
          enable-cache: true
          cache-dependency-glob: "uv.lock"

      - name: Set up Python ${{ matrix.python-version }}
        run: uv python install ${{ matrix.python-version }}

      - name: Install dependencies
        run: uv sync --python ${{ matrix.python-version }} --group dev --all-extras

      - name: Run tests
        if: ${{ !(matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13') }}
        run: uv run --all-extras pytest --tb=short -v

      - name: Run tests with coverage
        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
        run: uv run --all-extras pytest --tb=short -v --cov=pyphi --cov-report=xml

      - name: Upload coverage to Codecov
        if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.13'
        uses: codecov/codecov-action@v5
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: ./coverage.xml
          fail_ci_if_error: false

  test-no-xarray:
    runs-on: ubuntu-latest
    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Set up uv
        uses: astral-sh/setup-uv@v5
        with:
          enable-cache: true
          cache-dependency-glob: "uv.lock"

      - name: Set up Python 3.13
        run: uv python install 3.13

      - name: Install pyphi without xarray
        run: uv sync --python 3.13 --group dev

      - name: Run tests
        run: uv run pytest test/core/test_factored_tpm.py -v

  test-free-threaded:
    runs-on: ubuntu-latest
    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Set up uv
        uses: astral-sh/setup-uv@v5
        with:
          enable-cache: true
          cache-dependency-glob: "uv.lock"

      - name: Set up free-threaded Python 3.14t
        run: uv python install 3.14t

      - name: Create free-threaded environment and install
        # The dev dependency group is omitted on purpose: graphify's
        # tree-sitter-php has no free-threaded wheel. Install the runtime,
        # extras, and test tools directly.
        run: |
          uv venv --python 3.14t .venv-ft
          uv pip install --python .venv-ft \
            -e ".[visualize,caching,emd,xarray]" pytest hypothesis

      - name: Assert the GIL stays disabled after import
        run: |
          PYTHON_GIL=0 .venv-ft/bin/python -c \
            "import sys, pyphi; assert sys._is_gil_enabled() is False, 'GIL re-enabled after import pyphi'"

      - name: Run tests with the GIL disabled
        run: PYTHON_GIL=0 .venv-ft/bin/python -m pytest --tb=short