Release of GTN for gcms with metaMS#3
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| > {: .text-justify} | ||
| > {% snippet faqs/galaxy/datasets_rename.md %} | ||
| > | ||
| > > Not all **metaMS** R package functions have been made available in Galaxy. |
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| > {: .comment} | ||
| > | ||
| > > <tip-title>Export MSP file to external databases </tip-title> | ||
| > > >You can {% icon dataset-save %} download the MSP file and open it in your favorite spectra processing software or online database for further investigation! |
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| > > <tip-title>Export MSP file to external databases </tip-title> | ||
| > > >You can {% icon dataset-save %} download the MSP file and open it in your favorite spectra processing software or online database for further investigation! | ||
| > {: .tip} | ||
| > |
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| > - **RIshift** : if you want to use RI as filter, please precise here the RI shift. For our tutorial `keep the previous parameter to FALSE`. | ||
| ># Verify your data after the pre-processing and clean datasets | ||
| > | ||
| >When you have processed **all or only needed** steps described before, you can continue the processing of your data with statistics or annotation tools. |
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| > | ||
| > > <comment-title>Important : Be careful of the file format</comment-title> | ||
| > > During each step of pre-processing, your dataset has its format changed and can have also its name changed. To be able to continue to GC-MS processing, you need to have a RData object which is **merged and grouped** (from **xcms findChromPeaks Merger** {% icon tool %} and **xcms groupChromPeaks (group)** {% icon tool %}) at least. It means that you should have a file named `xset.merged.groupChromPeaks.RData` (and maybe with some step more in it). | ||
| > {: .comment} |
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GC-MS GTN ready for release