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flow_accumulation.py
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739 lines (615 loc) · 22.9 KB
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"""D8 flow accumulation: count of upstream cells draining through each cell.
Computes the number of upstream cells (including itself) that drain
through each cell in a D8 flow direction grid. This is a global
graph traversal (topological sort of the D8 flow forest), not a
local window operation.
Algorithm
---------
CPU : Kahn's BFS topological sort — O(N).
GPU : iterative frontier peeling with pull-based kernels.
Dask: iterative tile sweep with boundary propagation (one tile in
RAM at a time), following the ``cost_distance.py`` pattern.
"""
from __future__ import annotations
import numpy as np
import xarray as xr
from numba import cuda
try:
import cupy
except ImportError:
class cupy: # type: ignore[no-redef]
ndarray = False
try:
import dask.array as da
except ImportError:
da = None
from xrspatial.utils import (
_validate_raster,
cuda_args,
has_cuda_and_cupy,
is_cupy_array,
is_dask_cupy,
ngjit,
)
from xrspatial._boundary_store import BoundaryStore
from xrspatial.dataset_support import supports_dataset
# =====================================================================
# Direction helpers
# =====================================================================
@ngjit
def _code_to_offset(code):
"""Return (dy, dx) row/col offset for a D8 direction code."""
c = int(code)
if c == 1:
return 0, 1
elif c == 2:
return 1, 1
elif c == 4:
return 1, 0
elif c == 8:
return 1, -1
elif c == 16:
return 0, -1
elif c == 32:
return -1, -1
elif c == 64:
return -1, 0
elif c == 128:
return -1, 1
return 0, 0
def _code_to_offset_py(code):
"""Pure-Python version for non-numba contexts."""
c = int(code)
_map = {1: (0, 1), 2: (1, 1), 4: (1, 0), 8: (1, -1),
16: (0, -1), 32: (-1, -1), 64: (-1, 0), 128: (-1, 1)}
return _map.get(c, (0, 0))
# =====================================================================
# CPU kernel
# =====================================================================
@ngjit
def _flow_accum_cpu(flow_dir, height, width):
"""Kahn's BFS topological sort for flow accumulation."""
accum = np.empty((height, width), dtype=np.float64)
in_degree = np.zeros((height, width), dtype=np.int32)
valid = np.zeros((height, width), dtype=np.int8)
# Pass 1: initialise
for r in range(height):
for c in range(width):
v = flow_dir[r, c]
if v == v: # not NaN
valid[r, c] = 1
accum[r, c] = 1.0
else:
accum[r, c] = np.nan
# Pass 2: compute in-degrees
for r in range(height):
for c in range(width):
if valid[r, c] == 0:
continue
dy, dx = _code_to_offset(flow_dir[r, c])
if dy == 0 and dx == 0:
continue
nr = r + dy
nc = c + dx
if 0 <= nr < height and 0 <= nc < width and valid[nr, nc] == 1:
in_degree[nr, nc] += 1
# BFS queue (flat arrays with head/tail pointers)
queue_r = np.empty(height * width, dtype=np.int64)
queue_c = np.empty(height * width, dtype=np.int64)
head = np.int64(0)
tail = np.int64(0)
for r in range(height):
for c in range(width):
if valid[r, c] == 1 and in_degree[r, c] == 0:
queue_r[tail] = r
queue_c[tail] = c
tail += 1
while head < tail:
r = queue_r[head]
c = queue_c[head]
head += 1
dy, dx = _code_to_offset(flow_dir[r, c])
if dy == 0 and dx == 0:
continue
nr = r + dy
nc = c + dx
if 0 <= nr < height and 0 <= nc < width and valid[nr, nc] == 1:
accum[nr, nc] += accum[r, c]
in_degree[nr, nc] -= 1
if in_degree[nr, nc] == 0:
queue_r[tail] = nr
queue_c[tail] = nc
tail += 1
return accum
# =====================================================================
# GPU kernels
# =====================================================================
@cuda.jit
def _init_accum_indegree(flow_dir, accum, in_degree, state, H, W):
"""Initialise accum, in_degree and state arrays on GPU."""
i, j = cuda.grid(2)
if i >= H or j >= W:
return
v = flow_dir[i, j]
if v != v: # NaN
state[i, j] = 0
accum[i, j] = 0.0
return
state[i, j] = 1
accum[i, j] = 1.0
# Decode direction (inline — can't call @ngjit from @cuda.jit)
code = int(v)
dy = 0
dx = 0
if code == 1:
dy, dx = 0, 1
elif code == 2:
dy, dx = 1, 1
elif code == 4:
dy, dx = 1, 0
elif code == 8:
dy, dx = 1, -1
elif code == 16:
dy, dx = 0, -1
elif code == 32:
dy, dx = -1, -1
elif code == 64:
dy, dx = -1, 0
elif code == 128:
dy, dx = -1, 1
if dy == 0 and dx == 0:
return # pit
ni = i + dy
nj = j + dx
if 0 <= ni < H and 0 <= nj < W:
cuda.atomic.add(in_degree, (ni, nj), 1)
@cuda.jit
def _find_ready_and_finalize(in_degree, state, changed, H, W):
"""Finalize previous frontier (2→3), mark new frontier (1→2)."""
i, j = cuda.grid(2)
if i >= H or j >= W:
return
if state[i, j] == 2:
state[i, j] = 3
if state[i, j] == 1 and in_degree[i, j] == 0:
state[i, j] = 2
cuda.atomic.add(changed, 0, 1)
@cuda.jit
def _pull_from_frontier(flow_dir, accum, in_degree, state, H, W):
"""Active cells pull accumulation from frontier neighbours."""
i, j = cuda.grid(2)
if i >= H or j >= W:
return
if state[i, j] != 1:
return
# Check all 8 neighbours
for k in range(8):
if k == 0:
dy, dx = 0, 1
elif k == 1:
dy, dx = 1, 1
elif k == 2:
dy, dx = 1, 0
elif k == 3:
dy, dx = 1, -1
elif k == 4:
dy, dx = 0, -1
elif k == 5:
dy, dx = -1, -1
elif k == 6:
dy, dx = -1, 0
else:
dy, dx = -1, 1
ni = i + dy
nj = j + dx
if ni < 0 or ni >= H or nj < 0 or nj >= W:
continue
if state[ni, nj] != 2:
continue
# Check if neighbour's flow_dir points to me
nv = flow_dir[ni, nj]
ncode = int(nv)
ndy = 0
ndx = 0
if ncode == 1:
ndy, ndx = 0, 1
elif ncode == 2:
ndy, ndx = 1, 1
elif ncode == 4:
ndy, ndx = 1, 0
elif ncode == 8:
ndy, ndx = 1, -1
elif ncode == 16:
ndy, ndx = 0, -1
elif ncode == 32:
ndy, ndx = -1, -1
elif ncode == 64:
ndy, ndx = -1, 0
elif ncode == 128:
ndy, ndx = -1, 1
if ni + ndy == i and nj + ndx == j:
accum[i, j] += accum[ni, nj]
in_degree[i, j] -= 1
def _flow_accum_cupy(flow_dir_data):
"""GPU driver: iterative frontier peeling."""
import cupy as cp
H, W = flow_dir_data.shape
flow_dir_f64 = flow_dir_data.astype(cp.float64)
accum = cp.zeros((H, W), dtype=cp.float64)
in_degree = cp.zeros((H, W), dtype=cp.int32)
state = cp.zeros((H, W), dtype=cp.int32)
changed = cp.zeros(1, dtype=cp.int32)
griddim, blockdim = cuda_args((H, W))
_init_accum_indegree[griddim, blockdim](
flow_dir_f64, accum, in_degree, state, H, W)
max_iter = H * W
for _ in range(max_iter):
changed[0] = 0
_find_ready_and_finalize[griddim, blockdim](
in_degree, state, changed, H, W)
if int(changed[0]) == 0:
break
_pull_from_frontier[griddim, blockdim](
flow_dir_f64, accum, in_degree, state, H, W)
# Convert invalid cells to NaN
accum = cp.where(state == 0, cp.nan, accum)
return accum
# =====================================================================
# Tile kernel for dask iterative path
# =====================================================================
@ngjit
def _flow_accum_tile_kernel(flow_dir, h, w,
seed_top, seed_bottom, seed_left, seed_right,
seed_tl, seed_tr, seed_bl, seed_br):
"""Seeded BFS flow accumulation for a single tile.
Same as ``_flow_accum_cpu`` but adds external seeds to boundary
cells before BFS.
"""
accum = np.empty((h, w), dtype=np.float64)
in_degree = np.zeros((h, w), dtype=np.int32)
valid = np.zeros((h, w), dtype=np.int8)
# Initialise
for r in range(h):
for c in range(w):
v = flow_dir[r, c]
if v == v:
valid[r, c] = 1
accum[r, c] = 1.0
else:
accum[r, c] = np.nan
# Add external seeds to boundary cells
for c in range(w):
if valid[0, c] == 1:
accum[0, c] += seed_top[c]
if valid[h - 1, c] == 1:
accum[h - 1, c] += seed_bottom[c]
for r in range(h):
if valid[r, 0] == 1:
accum[r, 0] += seed_left[r]
if valid[r, w - 1] == 1:
accum[r, w - 1] += seed_right[r]
# Corner seeds
if valid[0, 0] == 1:
accum[0, 0] += seed_tl
if valid[0, w - 1] == 1:
accum[0, w - 1] += seed_tr
if valid[h - 1, 0] == 1:
accum[h - 1, 0] += seed_bl
if valid[h - 1, w - 1] == 1:
accum[h - 1, w - 1] += seed_br
# Compute in-degrees
for r in range(h):
for c in range(w):
if valid[r, c] == 0:
continue
dy, dx = _code_to_offset(flow_dir[r, c])
if dy == 0 and dx == 0:
continue
nr = r + dy
nc = c + dx
if 0 <= nr < h and 0 <= nc < w and valid[nr, nc] == 1:
in_degree[nr, nc] += 1
# BFS
queue_r = np.empty(h * w, dtype=np.int64)
queue_c = np.empty(h * w, dtype=np.int64)
head = np.int64(0)
tail = np.int64(0)
for r in range(h):
for c in range(w):
if valid[r, c] == 1 and in_degree[r, c] == 0:
queue_r[tail] = r
queue_c[tail] = c
tail += 1
while head < tail:
r = queue_r[head]
c = queue_c[head]
head += 1
dy, dx = _code_to_offset(flow_dir[r, c])
if dy == 0 and dx == 0:
continue
nr = r + dy
nc = c + dx
if 0 <= nr < h and 0 <= nc < w and valid[nr, nc] == 1:
accum[nr, nc] += accum[r, c]
in_degree[nr, nc] -= 1
if in_degree[nr, nc] == 0:
queue_r[tail] = nr
queue_c[tail] = nc
tail += 1
return accum
# =====================================================================
# Dask iterative tile sweep
# =====================================================================
def _preprocess_tiles(flow_dir_da, chunks_y, chunks_x):
"""Extract boundary flow-direction strips into a BoundaryStore."""
n_tile_y = len(chunks_y)
n_tile_x = len(chunks_x)
flow_bdry = BoundaryStore(chunks_y, chunks_x, fill_value=np.nan)
for iy in range(n_tile_y):
for ix in range(n_tile_x):
chunk = flow_dir_da.blocks[iy, ix].compute()
flow_bdry.set('top', iy, ix,
np.asarray(chunk[0, :], dtype=np.float64))
flow_bdry.set('bottom', iy, ix,
np.asarray(chunk[-1, :], dtype=np.float64))
flow_bdry.set('left', iy, ix,
np.asarray(chunk[:, 0], dtype=np.float64))
flow_bdry.set('right', iy, ix,
np.asarray(chunk[:, -1], dtype=np.float64))
return flow_bdry
def _compute_seeds(iy, ix, boundaries, flow_bdry,
chunks_y, chunks_x, n_tile_y, n_tile_x):
"""Compute seed arrays for tile (iy, ix) from neighbour boundaries.
For each boundary cell of the current tile, checks whether cells
in adjacent tiles flow INTO this tile. If so, adds the adjacent
cell's boundary accum value as a seed.
Returns (seed_top, seed_bottom, seed_left, seed_right,
seed_tl, seed_tr, seed_bl, seed_br).
"""
tile_h = chunks_y[iy]
tile_w = chunks_x[ix]
seed_top = np.zeros(tile_w, dtype=np.float64)
seed_bottom = np.zeros(tile_w, dtype=np.float64)
seed_left = np.zeros(tile_h, dtype=np.float64)
seed_right = np.zeros(tile_h, dtype=np.float64)
seed_tl = 0.0
seed_tr = 0.0
seed_bl = 0.0
seed_br = 0.0
# --- Top edge: bottom of tile above ---
if iy > 0:
nb_fdir = flow_bdry.get('bottom', iy - 1, ix)
nb_accum = boundaries.get('bottom', iy - 1, ix)
w = len(nb_fdir)
# Cardinal S (code 4): nb cell j → our (0, j)
mask = (nb_fdir == 4)
seed_top += np.where(mask, nb_accum, 0.0)
if w > 1:
# Diagonal SE (code 2): nb cell j → our (0, j+1)
mask = (nb_fdir[:-1] == 2)
seed_top[1:] += np.where(mask, nb_accum[:-1], 0.0)
# Diagonal SW (code 8): nb cell j → our (0, j-1)
mask = (nb_fdir[1:] == 8)
seed_top[:-1] += np.where(mask, nb_accum[1:], 0.0)
# --- Bottom edge: top of tile below ---
if iy < n_tile_y - 1:
nb_fdir = flow_bdry.get('top', iy + 1, ix)
nb_accum = boundaries.get('top', iy + 1, ix)
w = len(nb_fdir)
# Cardinal N (code 64)
mask = (nb_fdir == 64)
seed_bottom += np.where(mask, nb_accum, 0.0)
if w > 1:
# Diagonal NE (code 128): nb cell j → our (h-1, j+1)
mask = (nb_fdir[:-1] == 128)
seed_bottom[1:] += np.where(mask, nb_accum[:-1], 0.0)
# Diagonal NW (code 32): nb cell j → our (h-1, j-1)
mask = (nb_fdir[1:] == 32)
seed_bottom[:-1] += np.where(mask, nb_accum[1:], 0.0)
# --- Left edge: right column of tile to the left ---
if ix > 0:
nb_fdir = flow_bdry.get('right', iy, ix - 1)
nb_accum = boundaries.get('right', iy, ix - 1)
h = len(nb_fdir)
# Cardinal E (code 1)
mask = (nb_fdir == 1)
seed_left += np.where(mask, nb_accum, 0.0)
if h > 1:
# Diagonal SE (code 2): nb cell i → our (i+1, 0)
mask = (nb_fdir[:-1] == 2)
seed_left[1:] += np.where(mask, nb_accum[:-1], 0.0)
# Diagonal NE (code 128): nb cell i → our (i-1, 0)
mask = (nb_fdir[1:] == 128)
seed_left[:-1] += np.where(mask, nb_accum[1:], 0.0)
# --- Right edge: left column of tile to the right ---
if ix < n_tile_x - 1:
nb_fdir = flow_bdry.get('left', iy, ix + 1)
nb_accum = boundaries.get('left', iy, ix + 1)
h = len(nb_fdir)
# Cardinal W (code 16)
mask = (nb_fdir == 16)
seed_right += np.where(mask, nb_accum, 0.0)
if h > 1:
# Diagonal SW (code 8): nb cell i → our (i+1, w-1)
mask = (nb_fdir[:-1] == 8)
seed_right[1:] += np.where(mask, nb_accum[:-1], 0.0)
# Diagonal NW (code 32): nb cell i → our (i-1, w-1)
mask = (nb_fdir[1:] == 32)
seed_right[:-1] += np.where(mask, nb_accum[1:], 0.0)
# --- Diagonal corner seeds ---
# TL: bottom-right of (iy-1, ix-1) flows SE (code 2)
if iy > 0 and ix > 0:
fdir = flow_bdry.get('bottom', iy - 1, ix - 1)[-1]
if fdir == 2:
seed_tl = float(boundaries.get('bottom', iy - 1, ix - 1)[-1])
# TR: bottom-left of (iy-1, ix+1) flows SW (code 8)
if iy > 0 and ix < n_tile_x - 1:
fdir = flow_bdry.get('bottom', iy - 1, ix + 1)[0]
if fdir == 8:
seed_tr = float(boundaries.get('bottom', iy - 1, ix + 1)[0])
# BL: top-right of (iy+1, ix-1) flows NE (code 128)
if iy < n_tile_y - 1 and ix > 0:
fdir = flow_bdry.get('top', iy + 1, ix - 1)[-1]
if fdir == 128:
seed_bl = float(boundaries.get('top', iy + 1, ix - 1)[-1])
# BR: top-left of (iy+1, ix+1) flows NW (code 32)
if iy < n_tile_y - 1 and ix < n_tile_x - 1:
fdir = flow_bdry.get('top', iy + 1, ix + 1)[0]
if fdir == 32:
seed_br = float(boundaries.get('top', iy + 1, ix + 1)[0])
return (seed_top, seed_bottom, seed_left, seed_right,
seed_tl, seed_tr, seed_bl, seed_br)
def _process_tile(iy, ix, flow_dir_da, boundaries, flow_bdry,
chunks_y, chunks_x, n_tile_y, n_tile_x):
"""Run seeded BFS on one tile; update boundaries in-place.
Returns the maximum absolute boundary change (float).
"""
chunk = np.asarray(
flow_dir_da.blocks[iy, ix].compute(), dtype=np.float64)
h, w = chunk.shape
seeds = _compute_seeds(
iy, ix, boundaries, flow_bdry,
chunks_y, chunks_x, n_tile_y, n_tile_x)
accum = _flow_accum_tile_kernel(chunk, h, w, *seeds)
# Extract new boundary strips
new_top = accum[0, :].copy()
new_bottom = accum[-1, :].copy()
new_left = accum[:, 0].copy()
new_right = accum[:, -1].copy()
# Compute max absolute change
change = 0.0
for side, new in (('top', new_top), ('bottom', new_bottom),
('left', new_left), ('right', new_right)):
old = boundaries.get(side, iy, ix)
with np.errstate(invalid='ignore'):
diff = np.abs(new - old)
diff = np.where(np.isnan(diff), 0.0, diff)
m = float(np.max(diff))
if m > change:
change = m
# Store updated boundaries
boundaries.set('top', iy, ix, new_top)
boundaries.set('bottom', iy, ix, new_bottom)
boundaries.set('left', iy, ix, new_left)
boundaries.set('right', iy, ix, new_right)
return change
def _flow_accum_dask_iterative(flow_dir_da):
"""Iterative boundary-propagation for arbitrarily large dask arrays.
Memory usage is O(tile_size + boundary_strips) per iteration.
"""
chunks_y = flow_dir_da.chunks[0]
chunks_x = flow_dir_da.chunks[1]
n_tile_y = len(chunks_y)
n_tile_x = len(chunks_x)
# Phase 0: extract boundary flow dirs
flow_bdry = _preprocess_tiles(flow_dir_da, chunks_y, chunks_x)
flow_bdry = flow_bdry.snapshot() # read-only from here; release temp files
# Phase 1: initialise boundary accum to 0
boundaries = BoundaryStore(chunks_y, chunks_x, fill_value=0.0)
# Phase 2: iterative forward/backward sweeps
max_iterations = max(n_tile_y, n_tile_x) + 10
for _iteration in range(max_iterations):
max_change = 0.0
# Forward sweep (top-left -> bottom-right)
for iy in range(n_tile_y):
for ix in range(n_tile_x):
c = _process_tile(iy, ix, flow_dir_da, boundaries,
flow_bdry, chunks_y, chunks_x,
n_tile_y, n_tile_x)
if c > max_change:
max_change = c
# Backward sweep (bottom-right -> top-left)
for iy in reversed(range(n_tile_y)):
for ix in reversed(range(n_tile_x)):
c = _process_tile(iy, ix, flow_dir_da, boundaries,
flow_bdry, chunks_y, chunks_x,
n_tile_y, n_tile_x)
if c > max_change:
max_change = c
if max_change == 0.0:
break
# Snapshot converged boundaries before assembly (releases temp files)
boundaries = boundaries.snapshot()
# Phase 3: lazy assembly via da.map_blocks
return _assemble_result(flow_dir_da, boundaries, flow_bdry,
chunks_y, chunks_x, n_tile_y, n_tile_x)
def _assemble_result(flow_dir_da, boundaries, flow_bdry,
chunks_y, chunks_x, n_tile_y, n_tile_x):
"""Build a lazy dask array by re-running each tile with converged seeds."""
def _tile_fn(flow_dir_block, block_info=None):
if block_info is None or 0 not in block_info:
return np.full(flow_dir_block.shape, np.nan, dtype=np.float64)
iy, ix = block_info[0]['chunk-location']
h, w = flow_dir_block.shape
seeds = _compute_seeds(
iy, ix, boundaries, flow_bdry,
chunks_y, chunks_x, n_tile_y, n_tile_x)
return _flow_accum_tile_kernel(
np.asarray(flow_dir_block, dtype=np.float64), h, w, *seeds)
return da.map_blocks(
_tile_fn,
flow_dir_da,
dtype=np.float64,
meta=np.array((), dtype=np.float64),
)
def _flow_accum_dask_cupy(flow_dir_da):
"""Dask+CuPy: convert to numpy, run CPU iterative path, convert back."""
import cupy as cp
flow_dir_np = flow_dir_da.map_blocks(
lambda b: b.get(), dtype=flow_dir_da.dtype,
meta=np.array((), dtype=flow_dir_da.dtype),
)
result = _flow_accum_dask_iterative(flow_dir_np)
return result.map_blocks(
cp.asarray, dtype=result.dtype,
meta=cp.array((), dtype=result.dtype),
)
# =====================================================================
# Public API
# =====================================================================
@supports_dataset
def flow_accumulation(flow_dir: xr.DataArray,
name: str = 'flow_accumulation') -> xr.DataArray:
"""Compute D8 flow accumulation from a flow direction grid.
For each cell, counts how many upstream cells drain through it
(including itself). The input must be a D8 flow direction grid
(codes 0/1/2/4/8/16/32/64/128; NaN for nodata).
Parameters
----------
flow_dir : xarray.DataArray or xr.Dataset
2D NumPy, CuPy, NumPy-backed Dask, or CuPy-backed Dask
xarray DataArray of D8 flow direction codes.
If a Dataset is passed, the operation is applied to each
data variable independently.
name : str, default='flow_accumulation'
Name of output DataArray.
Returns
-------
xarray.DataArray or xr.Dataset
2D float64 array of flow accumulation values. Each cell
contains the count of upstream cells (including itself) that
drain through it. Cells with NaN flow direction produce NaN.
References
----------
Jenson, S.K. and Domingue, J.O. (1988). Extracting Topographic
Structure from Digital Elevation Data for Geographic Information
System Analysis. Photogrammetric Engineering and Remote Sensing,
54(11), 1593-1600.
"""
_validate_raster(flow_dir, func_name='flow_accumulation', name='flow_dir')
data = flow_dir.data
if isinstance(data, np.ndarray):
out = _flow_accum_cpu(data.astype(np.float64), *data.shape)
elif has_cuda_and_cupy() and is_cupy_array(data):
out = _flow_accum_cupy(data)
elif has_cuda_and_cupy() and is_dask_cupy(flow_dir):
out = _flow_accum_dask_cupy(data)
elif da is not None and isinstance(data, da.Array):
out = _flow_accum_dask_iterative(data)
else:
raise TypeError(f"Unsupported array type: {type(data)}")
return xr.DataArray(out,
name=name,
coords=flow_dir.coords,
dims=flow_dir.dims,
attrs=flow_dir.attrs)