Skip to content

Use Conda Python headers #839

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
DimitriPapadopoulos wants to merge 4 commits into
base: main
Choose a base branch
from
+29 −7
Draft

Use Conda Python headers #839

Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
562ff8e
Fix typos (#832)
DimitriPapadopoulos Apr 12, 2026
8c4a3ac
Install/run pytest in the proper environment
DimitriPapadopoulos Apr 18, 2026
d1f2691
Create the `test` env
DimitriPapadopoulos Apr 18, 2026
17c63a0
More fixing
DimitriPapadopoulos Apr 19, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
36 changes: 29 additions & 7 deletions .github/workflows/ci.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,8 @@ jobs:
channels: conda-forge
miniforge-version: latest
python-version: ${{ matrix.python-version }}
activate-environment: test
auto-activate-base: false

- name: Install compilers
run: conda install -y c-compiler cxx-compiler
Expand All @@ -47,21 +49,29 @@ jobs:
conda config --show-sources
conda list --show-channel-urls

- name: Meson args - prefer Conda over system Python (Ubuntu)
if: startsWith(matrix.platform, 'ubuntu')
run: |
echo "MESONPY_PYTHON=$(python -c 'import sys; print(sys.executable)')" >> $GITHUB_ENV

- name: Install numcodecs
run: |
# TODO: Remove this conditional when pcodec supports Python 3.14
if [[ "${{ matrix.python-version }}" == "3.14" ]]; then
python -m pip install -v ".[test,test_extras,msgpack,google_crc32c,crc32c,zfpy]"
python -m pip install -v \
".[test,test_extras,msgpack,google_crc32c,crc32c,zfpy]" \
pytest
else
python -m pip install -v ".[test,test_extras,msgpack,google_crc32c,crc32c,pcodec,zfpy]"
python -m pip install -v \
".[test,test_extras,msgpack,google_crc32c,crc32c,pcodec,zfpy]" \
pytest
fi

- name: List installed packages
run: python -m pip list

- name: Run tests
shell: "bash -l {0}"
run: pytest -v
run: python -m pytest -v

- uses: codecov/codecov-action@v5
with:
Expand Down Expand Up @@ -99,10 +109,16 @@ jobs:
channels: conda-forge
miniforge-version: latest
python-version: "3.13"
activate-environment: test
auto-activate-base: false

- name: Install compilers
run: conda install -y c-compiler cxx-compiler

- name: Meson args - prefer Conda over system Python (Ubuntu)
run: |
echo "MESONPY_PYTHON=$(python -c 'import sys; print(sys.executable)')" >> $GITHUB_ENV

- name: Install numcodecs
run: |
if [[ -n "${{ matrix.extras }}" ]]; then
Expand All @@ -115,7 +131,7 @@ jobs:
run: python -m pip list

- name: Run checksum tests
run: pytest -v tests/test_checksum32.py
run: python -m pytest -v tests/test_checksum32.py

- uses: codecov/codecov-action@v5
with:
Expand Down Expand Up @@ -153,18 +169,24 @@ jobs:
channels: conda-forge
miniforge-version: latest
python-version: "3.13"
activate-environment: test
auto-activate-base: false

- name: Install compilers
run: conda install -y c-compiler cxx-compiler

- name: Meson args - prefer Conda over system Python (Ubuntu)
run: |
echo "MESONPY_PYTHON=$(python -c 'import sys; print(sys.executable)')" >> $GITHUB_ENV

- name: Install numcodecs and Zarr
run: |
python -m pip install -v ".[test,test_extras]" "${{ matrix.zarr-pkg }}" crc32c
python -m pip install -v ".[test,test_extras]" "${{ matrix.zarr-pkg }}" crc32c
- name: List installed packages
run: python -m pip list

- name: Run Zarr integration tests
run: pytest tests/test_zarr3.py tests/test_zarr3_import.py
run: python -m pytest tests/test_zarr3.py tests/test_zarr3_import.py

- uses: codecov/codecov-action@v5
with:
Expand Down
Loading