Update pre-commit hooks + mypy fixes

Author: dstansby

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ ci:
 default_stages: [pre-commit, pre-push]
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.11.9
+    rev: v0.11.13
     hooks:
       - id: ruff
         args: ["--fix", "--show-fixes"]
@@ -22,7 +22,7 @@ repos:
       - id: check-yaml
       - id: trailing-whitespace
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.15.0
+    rev: v1.16.0
     hooks:
       - id: mypy
         files: src|tests

src/zarr/core/buffer/core.py

@@ -93,7 +93,7 @@ def ravel(self, order: Literal["K", "A", "C", "F"] = ...) -> Self: ...
 
     def all(self) -> bool: ...
 
-    def __eq__(self, other: object) -> Self:  # type: ignore[explicit-override, override]
+    def __eq__(self, other: object) -> Self:  # type: ignore[override]
         """Element-wise equal
 
         Notes

src/zarr/core/metadata/v3.py

@@ -272,9 +272,7 @@ def __init__(
         if fill_value is None:
             fill_value = default_fill_value(data_type_parsed)
         # we pass a string here rather than an enum to make mypy happy
-        fill_value_parsed = parse_fill_value(
-            fill_value, dtype=cast("ALL_DTYPES", data_type_parsed.value)
-        )
+        fill_value_parsed = parse_fill_value(fill_value, data_type_parsed.value)
         attributes_parsed = parse_attributes(attributes)
         codecs_parsed_partial = parse_codecs(codecs)
         storage_transformers_parsed = parse_storage_transformers(storage_transformers)
@@ -529,11 +527,12 @@ def parse_fill_value(
     if isinstance(fill_value, Sequence) and not isinstance(fill_value, str):
         if data_type in (DataType.complex64, DataType.complex128):
             if len(fill_value) == 2:
-                decoded_fill_value = tuple(
-                    SPECIAL_FLOATS_ENCODED.get(value, value) for value in fill_value
+                decoded_fill_value = (
+                    SPECIAL_FLOATS_ENCODED.get(fill_value[0], fill_value[0]),
+                    SPECIAL_FLOATS_ENCODED.get(fill_value[1], fill_value[1]),
                 )
                 # complex datatypes serialize to JSON arrays with two elements
-                return np_dtype.type(complex(*decoded_fill_value))
+                return np_dtype.type(complex(*decoded_fill_value))  # type: ignore[arg-type]
             else:
                 msg = (
                     f"Got an invalid fill value for complex data type {data_type.value}."

src/zarr/storage/_memory.py

@@ -136,7 +136,9 @@ async def delete(self, key: str) -> None:
         except KeyError:
             logger.debug("Key %s does not exist.", key)
 
-    async def set_partial_values(self, key_start_values: Iterable[tuple[str, int, bytes]]) -> None:
+    async def set_partial_values(
+        self, key_start_values: Iterable[tuple[str, int, bytes | bytearray | memoryview[int]]]
+    ) -> None:
         # docstring inherited
         raise NotImplementedError
 

src/zarr/storage/_zip.py

@@ -222,7 +222,9 @@ async def set(self, key: str, value: Buffer) -> None:
         with self._lock:
             self._set(key, value)
 
-    async def set_partial_values(self, key_start_values: Iterable[tuple[str, int, bytes]]) -> None:
+    async def set_partial_values(
+        self, key_start_values: Iterable[tuple[str, int, bytes | bytearray | memoryview[int]]]
+    ) -> None:
         raise NotImplementedError
 
     async def set_if_not_exists(self, key: str, value: Buffer) -> None: