Apply ruff/isort rule I001 to notebooks

I001 Import block is un-sorted or un-formatted

Author: DimitriPapadopoulos

notebooks/advanced_indexing.ipynb

@@ -25,11 +25,15 @@
    ],
    "source": [
     "import sys\n",
+    "\n",
     "sys.path.insert(0, '..')\n",
-    "import zarr\n",
     "import numpy as np\n",
+    "\n",
+    "import zarr\n",
+    "\n",
     "np.random.seed(42)\n",
     "import cProfile\n",
+    "\n",
     "zarr.__version__"
    ]
   },
@@ -1437,8 +1441,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "import tempfile\n",
     "import pstats\n",
+    "import tempfile\n",
+    "\n",
     "\n",
     "def profile(statement, sort='time', restrictions=(7,)):\n",
     "    with tempfile.NamedTemporaryFile() as f:\n",

notebooks/blosc_microbench.ipynb

@@ -20,7 +20,9 @@
    ],
    "source": [
     "import numpy as np\n",
+    "\n",
     "import zarr\n",
+    "\n",
     "zarr.__version__"
    ]
   },
@@ -101,10 +103,13 @@
     }
    ],
    "source": [
-    "import numpy as np\n",
     "import sys\n",
+    "\n",
+    "import numpy as np\n",
+    "\n",
     "sys.path.insert(0, '..')\n",
     "import zarr\n",
+    "\n",
     "zarr.__version__"
    ]
   },

notebooks/dask_2d_subset.ipynb

@@ -366,6 +366,7 @@
    "source": [
     "# what's taking so long?\n",
     "import cProfile\n",
+    "\n",
     "cProfile.run('gd[dim0_condition][:, dim1_indices]', sort='time')"
    ]
   },

notebooks/dask_copy.ipynb

@@ -134,20 +134,25 @@
    ],
    "source": [
     "import sys\n",
+    "\n",
     "sys.path.insert(0, '..')\n",
     "import zarr\n",
+    "\n",
     "print('zarr', zarr.__version__)\n",
-    "import numpy as np\n",
-    "import h5py\n",
     "import bcolz\n",
+    "import h5py\n",
+    "import numpy as np\n",
+    "\n",
     "# don't let bcolz use multiple threads internally, we want to\n",
     "# see whether dask can make good use of multiple CPUs\n",
     "bcolz.set_nthreads(1)\n",
     "import multiprocessing\n",
+    "\n",
     "import dask.array as da\n",
+    "from bokeh.io import output_notebook\n",
     "from dask.diagnostics import Profiler, ResourceProfiler\n",
     "from dask.diagnostics.profile_visualize import visualize\n",
-    "from bokeh.io import output_notebook\n",
+    "\n",
     "output_notebook()"
    ]
   },
@@ -159,9 +164,10 @@
    },
    "outputs": [],
    "source": [
-    "import tempfile\n",
     "import operator\n",
+    "import tempfile\n",
     "from functools import reduce\n",
+    "\n",
     "from zarr.util import human_readable_size\n",
     "\n",
     "\n",

notebooks/dask_count_alleles.ipynb

@@ -127,13 +127,16 @@
    ],
    "source": [
     "import sys\n",
+    "\n",
     "sys.path.insert(0, '..')\n",
     "import zarr\n",
+    "\n",
     "print('zarr', zarr.__version__)\n",
     "import h5py\n",
+    "from bokeh.io import output_notebook\n",
     "from dask.diagnostics import Profiler, ResourceProfiler\n",
     "from dask.diagnostics.profile_visualize import visualize\n",
-    "from bokeh.io import output_notebook\n",
+    "\n",
     "output_notebook()\n",
     "import allel"
    ]

notebooks/genotype_benchmark_compressors.ipynb

@@ -18,15 +18,20 @@
    ],
    "source": [
     "import sys\n",
+    "\n",
     "sys.path.insert(0, '..')\n",
     "import functools\n",
     "import timeit\n",
+    "\n",
     "import zarr\n",
+    "\n",
     "print('zarr', zarr.__version__)\n",
     "from zarr import blosc\n",
+    "\n",
     "print('blosc', blosc.version())\n",
-    "import numpy as np\n",
     "import h5py\n",
+    "import numpy as np\n",
+    "\n",
     "%matplotlib inline\n",
     "import matplotlib.pyplot as plt"
    ]

notebooks/object_arrays.ipynb

@@ -34,6 +34,7 @@
    ],
    "source": [
     "import zarr\n",
+    "\n",
     "zarr.__version__"
    ]
   },
@@ -55,6 +56,7 @@
    ],
    "source": [
     "import numcodecs\n",
+    "\n",
     "numcodecs.__version__"
    ]
   },
@@ -291,6 +293,7 @@
    ],
    "source": [
     "from numcodecs.tests.common import greetings\n",
+    "\n",
     "z = zarr.array(greetings, chunks=5, dtype=object, object_codec=numcodecs.MsgPack())\n",
     "z[:]"
    ]

notebooks/repr_tree.ipynb

@@ -18,6 +18,7 @@
    ],
    "source": [
     "import zarr\n",
+    "\n",
     "zarr.__version__"
    ]
   },

notebooks/store_benchmark.ipynb

@@ -32,6 +32,7 @@
    ],
    "source": [
     "import zarr\n",
+    "\n",
     "zarr.__version__"
    ]
   },
@@ -53,6 +54,7 @@
    ],
    "source": [
     "import bsddb3\n",
+    "\n",
     "bsddb3.__version__"
    ]
   },
@@ -74,6 +76,7 @@
    ],
    "source": [
     "import lmdb\n",
+    "\n",
     "lmdb.__version__"
    ]
   },
@@ -104,6 +107,7 @@
    "source": [
     "import os\n",
     "import shutil\n",
+    "\n",
     "bench_dir = '../data/bench'\n",
     "\n",
     "\n",

notebooks/zip_benchmark.ipynb

@@ -20,8 +20,10 @@
    ],
    "source": [
     "import sys\n",
+    "\n",
     "sys.path.insert(0, '..')\n",
     "import zarr\n",
+    "\n",
     "zarr.__version__"
    ]
   },
@@ -135,6 +137,7 @@
    ],
    "source": [
     "import cProfile\n",
+    "\n",
     "cProfile.run('z[:10]', sort='cumtime')"
    ]
   },
@@ -159,6 +162,7 @@
    "source": [
     "import dask\n",
     "import dask.array as da\n",
+    "\n",
     "dask.__version__"
    ]
   },