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Apply ruff/isort rule I001 to notebooks
I001 Import block is un-sorted or un-formatted
1 parent 4484d2d commit 9f6bb1d

10 files changed

+46
-9
lines changed

notebooks/advanced_indexing.ipynb

Lines changed: 7 additions & 2 deletions
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@@ -25,11 +25,15 @@
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],
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"source": [
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"import sys\n",
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"\n",
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"sys.path.insert(0, '..')\n",
29-
"import zarr\n",
3030
"import numpy as np\n",
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"\n",
32+
"import zarr\n",
33+
"\n",
3134
"np.random.seed(42)\n",
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"import cProfile\n",
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"\n",
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"zarr.__version__"
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]
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},
@@ -1437,8 +1441,9 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"import tempfile\n",
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"import pstats\n",
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"import tempfile\n",
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"\n",
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"\n",
14431448
"def profile(statement, sort='time', restrictions=(7,)):\n",
14441449
" with tempfile.NamedTemporaryFile() as f:\n",

notebooks/blosc_microbench.ipynb

Lines changed: 6 additions & 1 deletion
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@@ -20,7 +20,9 @@
2020
],
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"source": [
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"import numpy as np\n",
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"\n",
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"import zarr\n",
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"\n",
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"zarr.__version__"
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]
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},
@@ -101,10 +103,13 @@
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}
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],
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"source": [
104-
"import numpy as np\n",
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"import sys\n",
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"\n",
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"import numpy as np\n",
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"\n",
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"sys.path.insert(0, '..')\n",
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"import zarr\n",
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"\n",
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"zarr.__version__"
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]
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},

notebooks/dask_2d_subset.ipynb

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@@ -366,6 +366,7 @@
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"source": [
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"# what's taking so long?\n",
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"import cProfile\n",
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"\n",
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"cProfile.run('gd[dim0_condition][:, dim1_indices]', sort='time')"
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]
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},

notebooks/dask_copy.ipynb

Lines changed: 10 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -134,20 +134,25 @@
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],
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"source": [
136136
"import sys\n",
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"\n",
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"sys.path.insert(0, '..')\n",
138139
"import zarr\n",
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"\n",
139141
"print('zarr', zarr.__version__)\n",
140-
"import numpy as np\n",
141-
"import h5py\n",
142142
"import bcolz\n",
143+
"import h5py\n",
144+
"import numpy as np\n",
145+
"\n",
143146
"# don't let bcolz use multiple threads internally, we want to\n",
144147
"# see whether dask can make good use of multiple CPUs\n",
145148
"bcolz.set_nthreads(1)\n",
146149
"import multiprocessing\n",
150+
"\n",
147151
"import dask.array as da\n",
152+
"from bokeh.io import output_notebook\n",
148153
"from dask.diagnostics import Profiler, ResourceProfiler\n",
149154
"from dask.diagnostics.profile_visualize import visualize\n",
150-
"from bokeh.io import output_notebook\n",
155+
"\n",
151156
"output_notebook()"
152157
]
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},
@@ -159,9 +164,10 @@
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},
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"outputs": [],
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"source": [
162-
"import tempfile\n",
163167
"import operator\n",
168+
"import tempfile\n",
164169
"from functools import reduce\n",
170+
"\n",
165171
"from zarr.util import human_readable_size\n",
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"\n",
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"\n",

notebooks/dask_count_alleles.ipynb

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -127,13 +127,16 @@
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],
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"source": [
129129
"import sys\n",
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"\n",
130131
"sys.path.insert(0, '..')\n",
131132
"import zarr\n",
133+
"\n",
132134
"print('zarr', zarr.__version__)\n",
133135
"import h5py\n",
136+
"from bokeh.io import output_notebook\n",
134137
"from dask.diagnostics import Profiler, ResourceProfiler\n",
135138
"from dask.diagnostics.profile_visualize import visualize\n",
136-
"from bokeh.io import output_notebook\n",
139+
"\n",
137140
"output_notebook()\n",
138141
"import allel"
139142
]

notebooks/genotype_benchmark_compressors.ipynb

Lines changed: 6 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -18,15 +18,20 @@
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],
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"source": [
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"import sys\n",
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"\n",
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"sys.path.insert(0, '..')\n",
2223
"import functools\n",
2324
"import timeit\n",
25+
"\n",
2426
"import zarr\n",
27+
"\n",
2528
"print('zarr', zarr.__version__)\n",
2629
"from zarr import blosc\n",
30+
"\n",
2731
"print('blosc', blosc.version())\n",
28-
"import numpy as np\n",
2932
"import h5py\n",
33+
"import numpy as np\n",
34+
"\n",
3035
"%matplotlib inline\n",
3136
"import matplotlib.pyplot as plt"
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]

notebooks/object_arrays.ipynb

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@@ -34,6 +34,7 @@
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],
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"source": [
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"import zarr\n",
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"\n",
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"zarr.__version__"
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]
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},
@@ -55,6 +56,7 @@
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],
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"source": [
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"import numcodecs\n",
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"\n",
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"numcodecs.__version__"
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]
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},
@@ -291,6 +293,7 @@
291293
],
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"source": [
293295
"from numcodecs.tests.common import greetings\n",
296+
"\n",
294297
"z = zarr.array(greetings, chunks=5, dtype=object, object_codec=numcodecs.MsgPack())\n",
295298
"z[:]"
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]

notebooks/repr_tree.ipynb

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Original file line numberDiff line numberDiff line change
@@ -18,6 +18,7 @@
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],
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"source": [
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"import zarr\n",
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"\n",
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"zarr.__version__"
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]
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},

notebooks/store_benchmark.ipynb

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Original file line numberDiff line numberDiff line change
@@ -32,6 +32,7 @@
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],
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"source": [
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"import zarr\n",
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"\n",
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"zarr.__version__"
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]
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},
@@ -53,6 +54,7 @@
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],
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"source": [
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"import bsddb3\n",
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"\n",
5658
"bsddb3.__version__"
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]
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},
@@ -74,6 +76,7 @@
7476
],
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"source": [
7678
"import lmdb\n",
79+
"\n",
7780
"lmdb.__version__"
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]
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},
@@ -104,6 +107,7 @@
104107
"source": [
105108
"import os\n",
106109
"import shutil\n",
110+
"\n",
107111
"bench_dir = '../data/bench'\n",
108112
"\n",
109113
"\n",

notebooks/zip_benchmark.ipynb

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -20,8 +20,10 @@
2020
],
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"source": [
2222
"import sys\n",
23+
"\n",
2324
"sys.path.insert(0, '..')\n",
2425
"import zarr\n",
26+
"\n",
2527
"zarr.__version__"
2628
]
2729
},
@@ -135,6 +137,7 @@
135137
],
136138
"source": [
137139
"import cProfile\n",
140+
"\n",
138141
"cProfile.run('z[:10]', sort='cumtime')"
139142
]
140143
},
@@ -159,6 +162,7 @@
159162
"source": [
160163
"import dask\n",
161164
"import dask.array as da\n",
165+
"\n",
162166
"dask.__version__"
163167
]
164168
},

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