Merge branch 'main' into patch_coverage

Author: d-v-b

.github/ISSUE_TEMPLATE/release-checklist.md

@@ -0,0 +1,18 @@
+name: Check changelog entries
+
+on:
+  pull_request:
+
+jobs:
+  check-changelogs:
+    name: Check changelog entries
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
+
+      - name: Install uv
+        uses: astral-sh/setup-uv@e92bafb6253dcd438e0484186d7669ea7a8ca1cc # v6.4.3
+
+      - name: Check changelog entries
+        run: uv run --no-sync python ci/check_changelog_entries.py

.github/workflows/check_changelogs.yml

@@ -5,9 +5,9 @@ name: GPU Test
 
 on:
   push:
-    branches: [ main ]
+    branches: [ main, 3.1.x ]
   pull_request:
-    branches: [ main ]
+    branches: [ main, 3.1.x ]
   workflow_dispatch:
 
 env:
@@ -63,7 +63,7 @@ jobs:
         hatch env run -e gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} list-env
     - name: Run Tests
       run: |
-        hatch env run --env gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage
+        hatch env run --env gputest.py${{ matrix.python-version }}-${{ matrix.numpy-version }}-${{ matrix.dependency-set }} run-coverage-gpu
 
     - name: Upload coverage
       uses: codecov/codecov-action@13ce06bfc6bbe3ecf90edbbf1bc32fe5978ca1d3  # v5.3.1

.github/workflows/gpu_test.yml

@@ -1,11 +1,9 @@
 name: Slow Hypothesis CI
 on:
   push:
-    branches:
-      - "main"
+    branches: [main, 3.1.x]
   pull_request:
-    branches:
-      - "main"
+    branches: [main, 3.1.x]
     types: [opened, reopened, synchronize, labeled]
   schedule:
     - cron: "0 0 * * *" # Daily “At 00:00” UTC
@@ -89,7 +87,7 @@ jobs:
         && steps.status.outcome == 'failure'
         && github.event_name == 'schedule'
         && github.repository_owner == 'zarr-developers'
-      uses: xarray-contrib/issue-from-pytest-log@v1
+      uses: scientific-python/issue-from-pytest-log-action@v1
       with:
         log-path: output-${{ matrix.python-version }}-log.jsonl
         issue-title: "Nightly Hypothesis tests failed"

.github/workflows/hypothesis.yaml

@@ -5,9 +5,9 @@ name: Test
 
 on:
   push:
-    branches: [ main ]
+    branches: [ main, 3.1.x ]
   pull_request:
-    branches: [ main ]
+    branches: [ main, 3.1.x ]
   workflow_dispatch:
 
 concurrency:
@@ -21,20 +21,20 @@ jobs:
     strategy:
       matrix:
         python-version: ['3.11', '3.12', '3.13']
-        numpy-version: ['1.25', '2.2']
+        numpy-version: ['1.26', '2.2']
         dependency-set: ["minimal", "optional"]
         os: ["ubuntu-latest"]
         include:
           - python-version: '3.11'
-            numpy-version: '1.25'
+            numpy-version: '1.26'
             dependency-set: 'optional'
             os: 'macos-latest'
           - python-version: '3.13'
             numpy-version: '2.2'
             dependency-set: 'optional'
             os: 'macos-latest'
           - python-version: '3.11'
-            numpy-version: '1.25'
+            numpy-version: '1.26'
             dependency-set: 'optional'
             os: 'windows-latest'
           - python-version: '3.13'

.github/workflows/test.yml

@@ -6,7 +6,7 @@ ci:
 default_stages: [pre-commit, pre-push]
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.2
+    rev: v0.12.7
     hooks:
       - id: ruff-check
         args: ["--fix", "--show-fixes"]
@@ -22,7 +22,7 @@ repos:
       - id: check-yaml
       - id: trailing-whitespace
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.16.1
+    rev: v1.17.1
     hooks:
       - id: mypy
         files: src|tests
@@ -49,7 +49,7 @@ repos:
       - id: rst-directive-colons
       - id: rst-inline-touching-normal
   - repo: https://github.com/numpy/numpydoc
-    rev: v1.8.0
+    rev: v1.9.0
     hooks:
       - id: numpydoc-validation
   - repo: https://github.com/twisted/towncrier

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 The MIT License (MIT)
 
-Copyright (c) 2015-2024 Zarr Developers <https://github.com/zarr-developers>
+Copyright (c) 2015-2025 Zarr Developers <https://github.com/zarr-developers>
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal