digimuh/CITATION.cff at main · zerotonin/digimuh · GitHub

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cff-version: 1.2.0
title: "DigiMuh: dairy-cow sensor data ingestion and heat-stress analysis"
message: "If you use this software, please cite it as below."
type: software
version: "1.0.0"
date-released: "2026-05-26"
doi: "10.5281/zenodo.20389795"
license: MIT
repository-code: "https://github.com/zerotonin/digimuh"
url: "https://zerotonin.github.io/digimuh/"
identifiers:
  - type: doi
    value: "10.5281/zenodo.20389795"
    description: "Zenodo archive of DigiMuh v1.0.0 (Frontiers in Animal Science snapshot)"
keywords:
  - dairy
  - cattle
  - precision-livestock-farming
  - heat-stress
  - sensor-data
  - SQLite
  - smaxtec
  - HerdePlus
  - broken-stick-regression
  - intraclass-correlation
  - repeatability
  - thermal-index
  - Python
authors:
  - given-names: "Bart R.H."
    family-names: Geurten
    email: bart.geurten@otago.ac.nz
    orcid: "https://orcid.org/0000-0002-1816-3241"
    affiliation: "Department of Zoology, University of Otago, Dunedin, New Zealand"
abstract: >-
  DigiMuh is a research software pipeline for dairy-cow heat-stress
  analysis.  It consolidates ~9 GB of heterogeneous sensor data
  (smaXtec rumen boluses, smaXtec barn climate, HerdePlus milking
  and MLP analytics, Gouna respiration, BCS, HOBO weather, DWD)
  into a normalised SQLite database, and provides an analysis suite
  that derives per-animal heat-stress breakpoints (broken-stick
  regression with profile-RSS confidence intervals), individual
  repeatability (ICC(1,1) with stackable lactation / DIM / yield /
  measurement-error corrections), and downstream behavioural and
  productive responses.  Statistical methods (broken-stick, Davies
  and Pseudo-Score breakpoint tests, Hill 4PL, Benjamini-Hochberg
  FDR) are delegated to the reRandomStats >= 0.2.0 toolkit so that
  the same algorithmic core is shared across the laboratory's
  precision-livestock-farming and behavioural-biology projects.
references:
  - type: software
    title: "reRandomStats: Re-randomisation Statistics Toolkit"
    version: "0.2.0"
    doi: "10.5281/zenodo.20387255"
    url: "https://github.com/zerotonin/reRandomStats"
    authors:
      - given-names: "Bart R.H."
        family-names: Geurten
        orcid: "https://orcid.org/0000-0002-1816-3241"